In ORCHESTRA you can get output for any variable, for any cell, at any timestep to a user defined text file.
1 Define the cells for which output is generated and the file to which output is written in the concert.xml file:
<Task Name="write_output" Type="OutstreamGroup"> <File>output.dat</File> <Nodes>(1-10)</Nodes> </Task>
2 Call the write_output task somewhere in the main calculation loop:
<Task Name="each_timestep" Type="TaskGroup"> <DoTask Name="read_input" /> <DoTask Name="calculate_equilibrium" /> <DoTask Name="write_output" /> </Task>
Runnning ORCHESTRA will now generate an output file “output.dat”.
In this “output” file we define the variables for which we want output, and how frequently we want this output.
Output_every: 1 Var: pH pe Ca+2.diss After run:
Output_every: 1 Var: pH pe Ca+2.diss Data: 5.0 8.4 3.45e-4 Data: 6.0 7.4 8.28e-3 Data: 7.0 6.4 2.96e-2